bedpe_to_bedpedb


chr3d.utils.bedpe_to_bedpedb(
    bedpe_path: str,
    output_bedpedb: str,
    assembly: str = "hg38",
    importance_col: int = 8,
    max_per_tile: int = 100,
    tile_size: int = 1024,
) -> str

Run clodius aggregate bedpe to produce a SQLite bedpedb file.

Converts BEDPE to HiGlass-compatible bedpedb format for visualization as 1D arcs tracks.

Parameters

Parameter	Type	Description
bedpe_path	`str`	Path to input BEDPE file
output_bedpedb	`str`	Path for output bedpedb file
assembly	`str`	Genome assembly (default: `"hg38"`)
importance_col	`int`	1-based column index for importance score (default: 8 = score column)
max_per_tile	`int`	Maximum entries per tile (default: 100)
tile_size	`int`	Tile size in bp (default: 1024)

Returns:

str — Path to output bedpedb file.